Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs78882866 chr6:43263473 T/G 5.34E-10 485 31.23 28.57 44.3 KM Plot
PRAD rs78910901 chr2:178791342 A/AG 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs78965497 chr4:187812304 C/T 2.16E-6 482 31.07 28.57 26.8 KM Plot
PRAD rs78989140 chr2:107436777 G/A 1.49E-5 489 30.93 30.7 32.63 KM Plot
PRAD rs78999561 chr5:137990730 G/GA 2.66E-5 488 30.8 31.28 27.33 KM Plot
PRAD rs79006210 chr9:124286420 A/C 0.00016 483 31.07 31.43 20.98 KM Plot
PRAD rs79009481 chr6:43343239 T/C 5.57E-10 484 31.25 28.57 44.3 KM Plot
PRAD rs79028173 chr1:1159062 T/C 2.84E-10 485 31.27 30.73 13.73 KM Plot
PRAD rs79062387 chr2:107437375 T/C 1.49E-5 489 30.93 30.7 32.63 KM Plot
PRAD rs79065998 chr2:239187990 G/A 7.36E-5 487 31.33 30.98 17.2 KM Plot
PRAD rs7907202 chr10:131789955 G/A 7.32E-6 474 32.13 29.13 26.37 KM Plot
PRAD rs79074982 chr5:171529422 T/C 1.41E-7 486 30.87 32 13.18 KM Plot
PRAD rs7910987 chr10:131802999 C/T 9.23E-7 484 31.27 29.8 28.98 KM Plot
PRAD rs79118541 chr1:1157547 T/C 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs79130751 chr7:6777952 G/A 3.63E-5 490 31 30.2 35.28 KM Plot